Lisa joined the lab in early 2022 as part of our new Institute for Infectious and Zoonotic Diseases (IIZD). She comes to us from the Children’s Hospital of Philadelphia, where she established and directed the CHOP Microbiome Center’s sequencing core. She got her PhD in the laboratory of Akiko Iwasaki at Yale University, and she did her postdoc in the Molecular Diagnostics Lab at Yale New Haven Hospital.
Ekram joined the lab in early 2022 as an undergraduate Health and Societies major (premed) and has been working on a project that uses metagenomics and longitudinal sampling to identify sources of early colonizers of the infant gut.
Sanya spent the summer of 2021 working in the lab on collaborative project that examined the microbiome in dogs with immune mediated disease.
Luke is a rising second year veterinary student at PennVet and is spending the summer of 2021 in the lab as an NIH/Boehringer Ingelheim (NIH-BI) Summer Research fellow. His project focuses on evaluating functional properties of bile acid-producing clostridia.
Leah completed her veterinary degree at Kansas State University and is currently an internal medicine resident at PennVet. Although Leah spends the majority of her time in the clinic, she will be working periodically in the lab to develop a residency research project focused on using portable QPCR technology (Biomeme, Inc.) to develop assays for measuring gut dysbiosis in client-owned dogs.
Ann completed her Ph.D. and postdoc in the laboratory of Danielle Bassett at UPenn, where she used network theory to address questions in cognitive neuroscience. Ann’s role on the team is to advance data analysis and visualization methods for our microbiomeDB project, and she works closely with the larger VEuPathDB team that is our partner in this effort.
Qianxuan completed his first of three rotations in the lab and is a member of the Microbiology, Virology and Parasitology (MVP) Graduate group. Qianxuan’s project focused on a bile acid-prodcing commensal, Clostridium hiranonis, which we initially identified as an important factor in modulating GI disease. Due to COVID, Qianxuan has worked virtually to annotate a recently completed genome of C. hiranonis, while exploring published and unpublished shotgun metagenomic datasets to better understand this organism.
Seble spent the Summer of 2020 ‘in the lab’ (virutally, due to COVID) doing a rotation. She is a member of the Immunology Graduate Group (IGG), and her project focused on using bioinformatic tools to analyze single cell RNA sequencing data (scRNA-seq) from 3-dimensional cultures of intestinal epithelial cells in order to understand how these cells might be better poised to response to infection or inflammation.
Lydia spent the Spring of 2020 doing a virutal rotation in the lab during the earliest (and scariest!) phase of the COVID19 pandemic. She is a member of the Microbiology, Virology and Parasitology (MVP) Graduate group. Her rotation was mostly devoted to learning the computationoal methods and principles of RNA-seq.
Cleo was enrolled in the Masters of Biotechnology program at UPenn. As part of the molecular biology track within this program, Cleo did her independent study in the lab working with some of the bacterial isolates from our canine IBD study to try to set-up in vitro systems to study microbe-microbe interactions between bile acid producers and pathobionts. Unfortunately, this work was cut short by the COVID19 pandemic, but Cleo still finished her independent study virtually.